解:$(1)$∵四边形$ABCD$是正方形,
∴$DA = AB,$$∠BAD=∠ABF = 90°。$
∴$∠PAD+∠BAF = 90°。$
∵$DE\perp AF,$
∴$∠APD = 90°。$
∴$∠PAD+∠ADE = 90°。$
∴$∠ADE=∠BAF。$
在$\triangle DAE$和$\triangle ABF $中,
∵$∠ADE=∠BAF,$$DA = AB,$$∠DAE=∠ABF,$
∴$\triangle DAE\cong \triangle ABF。$
∴$AE = BF。$
$(3)$过点$E$作$ET\perp CD$于点$T,$则$∠ETG=∠ETC = 90°。$
∵四边形$ABCD$是正方形,
∴$AB = BC,$$∠ABC=∠C = 90°。$
∴四边形$BCTE$是矩形,$∠ABF=∠ETG。$
∴$ET = BC = AB,$$BE = TC,$$∠BET=∠AET = 90°。$
∴$∠AEP+∠TEG = 90°。$
∵$AF\perp EG,$
∴$∠APE = 90°。$
∴$∠AEP+∠BAF = 90°。$
∴$∠BAF=∠TEG。$
在$\triangle ABF $和$\triangle ETG_{中},$
$\begin {cases}∠BAF=∠TEG\\AB = ET\\∠ABF=∠ETG\end {cases},$
∴$\triangle ABF\cong \triangle ETG。$
∴$BF = TG=x。$
∵四边形$ABCD$是正方形,
∴$AD = AB = CD = 2,$$AD// BC,$$DG// BE。$
易得$\triangle BPF\sim \triangle DPA,$$\triangle BPE\sim \triangle DPG。$
∴$\frac {BP}{DP}=\frac {BF}{DA},$$\frac {BE}{DG}=\frac {BP}{DP}。$
∴$\frac {BE}{DG}=\frac {BF}{DA}。$
∴$\frac {BE}{y}=\frac {x}{2}。$
∴$BE = TC=\frac {1}{2}xy。$
∵$TG = CD - DG - TC,$
∴$x = 2 - y-\frac {1}{2}xy。$
∴$y=\frac {4 - 2x}{x + 2}(0\leqslant x\leqslant 2)。$